Folklore Clinical Variant Interpretation MCP
Bioinformatics MCP for genomic variant interpretation, gene-disease evidence and literature.
Connect it
Settings → Connectors → Add custom connector
URL: https://api.helena.bio/folklore/v1/mcpSettings → Apps & Connectors → Advanced → Developer mode
Create connector with URL: https://api.helena.bio/folklore/v1/mcp{
"mcpServers": {
"folklore": {
"url": "https://api.helena.bio/folklore/v1/mcp"
}
}
}claude mcp add --transport http folklore https://api.helena.bio/folklore/v1/mcp{
"servers": {
"folklore": {
"type": "http",
"url": "https://api.helena.bio/folklore/v1/mcp"
}
}
}7 tools, verified live
search_variant_evidenceread-onlyInterpret this variant, explain what this HGVS means, or review this VUS. Use for human genomic variant analysis within bioinformatics workflows, including review of an already identified WGS/WES variant. Use when a user asks to classify or interpret pathogenicity, review a VUS, check available ClinVar assertions or population-frequency evidence, or resolve a variant notation. Classify, interpret
search_variant_literatureread-onlyResolve one public GRCh38 germline variant and retrieve relevant publications from Folklore's PubMed-derived genetics corpus. Exact variant mentions rank ahead of broader gene associations. Use when a user asks what has been published about a variant, gene or associated condition. Associations do not establish causality, pathogenicity or a diagnosis and do not change Folklore's ACMG/AMP classifica
get_publication_detailsread-onlyRetrieve the complete public bibliographic record for one PMID from Folklore's PubMed-derived genetics corpus. Returns the full abstract, authors, journal metadata, publication and MeSH terms, gene and variant mentions, retraction status, and PubMed/PMC links. Use after literature search when a user asks to inspect a specific publication. This is read-only professional literature evidence and cont
search_literature_corpusread-onlySemantically search the public scientific Literature Corpus by a natural-language question. A question may include one or more PMID, DOI or PMCID references; those publications become exact anchors for finding related experiments, evidence and concepts across the corpus. Also accepts genes, variants, phenotypes, HPO and OMIM concepts. Include every known publication identifier in the query when th
support_helenaread-onlyLearn how an agent can support or spread Helena's free public scientific infrastructure through the separate Helena Good MCP. This is an explicit opt-in information action. It does not initiate payment, create a relay, or change any Folklore scientific result.
get_gene_disease_associationsread-onlyFind diseases associated with one human gene for bioinformatics and clinical genomics research. Accepts an exact gene symbol or HGNC identifier. Returns ClinGen gene-disease validity assertions, relation-specific inheritance, source reports and snapshot provenance. Preserves conflicting and limited assertions. Gene-disease validity is not variant pathogenicity or a patient diagnosis. Use only a pu
search_disease_genesread-onlyFind human genes associated with a disease for genomic analysis and rare-disease research. Accepts an exact MONDO identifier or a disease-name search. Returns matching ClinGen gene-disease validity assertions with inheritance, source reports and snapshot provenance. Name searches may match multiple diseases; preserve their distinct identities and do not infer a diagnosis. Use only a public disease
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